| Preface | 5 |
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| Foreword | 6 |
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| Contents | 9 |
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| List of Contributors | 14 |
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| 1 The Road to Hydrogenosomes | 16 |
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| 1.1 Introduction | 16 |
| 1.2 The Story | 17 |
| 1.3 Conclusion | 24 |
| References | 25 |
| 2 Mitochondria: Key to Complexity | 27 |
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| 2.1 Introduction | 27 |
| 2.2 Size | 29 |
| 2.3 Compartments | 30 |
| 2.4 Dynamics of Gene Gain and Gene Loss in Bacteria | 31 |
| 2.5 ATP Regulation of Bacterial Replication | 35 |
| 2.6 Redox Poise Across Bioenergetic Membranes | 39 |
| 2.7 Allometric Scaling of Metabolic Rate and Complexity | 43 |
| 2.8 Conclusions | 46 |
| References | 47 |
| 3 Origin, Function, and Transmission of Mitochondria | 53 |
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| 3.1 Introduction | 53 |
| 3.2 Origins of Mitochondria | 54 |
| 3.3 Mitochondrial Genomes | 57 |
| 3.4 The Mitochondrial Theory of Ageing | 59 |
| 3.5 Why Are There Genes in Mitochondria? | 61 |
| 3.6 Co-location of Gene and Gene Product Permits Redox Regulation of Gene Expression | 62 |
| 3.7 Maternal Inheritance of Mitochondria | 64 |
| 3.8 Conclusions | 67 |
| References | 67 |
| 4 Mitochondria and Their Host: Morphology to Molecular Phylogeny | 71 |
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| 4.1 Introduction | 71 |
| 4.2 Alternative Visions | 71 |
| 4.3 Before the Word | 73 |
| 4.4 Les Symbiotes | 74 |
| 4.5 Symbionticism and the Origin of Species | 76 |
| 4.6 Against the Current | 77 |
| 4.7 Infective Heredity | 79 |
| 4.8 The Tipping Point | 81 |
| 4.9 The Birth of Bacterial Phylogenetics | 83 |
| 4.10 Just-So Stories | 84 |
| 4.11 Kingdom Come, Kingdom Go | 85 |
| 4.12 A Chimeric Paradigm | 88 |
| 4.13 Recapitulation | 91 |
| References | 92 |
| 5 Anaerobic Mitochondria: Properties and Origins | 98 |
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| Summary | 98 |
| 5.1 Introduction | 98 |
| 5.2 Possible Variants in Anaerobic Metabolism | 99 |
| 5.3 Cytosolic Adaptations to an Anaerobic Energy Metabolism | 101 |
| 5.4 Anaerobically Functioning ATP-Generating Organelles | 102 |
| 5.5 Energy Metabolism in Anaerobically Functioning Mitochondria | 103 |
| 5.6 Adaptations in Electron-Transport Chains in Anaerobic Mitochondria | 108 |
| 5.7 Structural Aspects of Anaerobically Functioning Electron- Transport Chains | 109 |
| 5.8 Evolutionary Origin of Anaerobic Mitochondria | 110 |
| 5.9 Conclusion | 113 |
| References | 113 |
| 6 Iron–Sulfur Proteins and Iron–Sulfur Cluster Assembly in Organisms with Hydrogenosomes and Mitosomes | 117 |
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| 6.1 Introduction | 117 |
| 6.2 Mitochondrion-Related Organelles in “Amitochondriate” Eukaryotes | 118 |
| 6.3 Iron–Sulfur Cluster, an Ancient Indispensable Prosthetic Group | 121 |
| 6.4 Iron–Sulfur Proteins in Mitochondria and Other Cell Compartments | 121 |
| 6.5 Iron–Sulfur Proteins in Organisms Harboring Hydrogenosomes and Mitosomes | 122 |
| 6.6 Iron–Sulfur Cluster Assembly Machineries | 128 |
| 6.7 Iron–Sulfur Cluster Biosynthesis and the Evolution of Mitochondria | 135 |
| References | 139 |
| 7 Hydrogenosomes (and Related Organelles, Either) Are Not the Same | 146 |
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| 7.1 Introduction | 146 |
| 7.2 Hydrogenosomes and Mitochondrial-Remnant Organelles Evolved Repeatedly: Evidence from ADP/ ATP Carriers | 150 |
| 7.3 Functional Differences Between Mitochondrial and Alternative ADP/ ATP Transporters | 153 |
| 7.4 Evolutionary Tinkering in the Evolution of Hydrogenosomes | 155 |
| 7.5 Why an [Fe]-Only Hydrogenase? | 163 |
| 7.6 Conclusions | 164 |
| References | 165 |
| 8 The Chimaeric Origin of Mitochondria: Photosynthetic Cell Enslavement, Gene- Transfer Pressure, and Compartmentation Efficiency | 171 |
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| Summary | 171 |
| 8.1 Key Early Ideas | 172 |
| 8.2 The Host Was a Protoeukaryote Not an Archaebacterium | 176 |
| 8.3 Was the Slave Initially Photosynthetic? | 178 |
| 8.4 Three Phases of | 179 |
| proteobacterial Enslavement | 179 |
| 8.5 Did Syntrophy or Endosymbiosis Precede Enslavement? | 183 |
| 8.6 The Chimaeric Origin of Mitochondrial Protein Import and Targeting | 186 |
| 8.7 Stage 2: Recovery from Massive Organelle–Host Gene Transfer | 190 |
| 8.8 Mitochondrial Diversification | 195 |
| 8.9 Conceptual Aspects of Megaevolution | 195 |
| 8.10 Relative Genomic Contributions of the Two Partners | 198 |
| 8.11 Genic Scale, Tempo, and Timing of Mitochondrial Enslavement and Eukaryote Origin | 202 |
| References | 205 |
| 9 Constantin Merezhkowsky and the Endokaryotic Hypothesis | 210 |
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| Summary | 210 |
| 9.1 Introduction | 211 |
| 9.2 Modern Hypotheses of Eukaryotic Origin | 212 |
| 9.3 Chimeric Nature of a Pro-eukaryote | 222 |
| 9.4 Mitochondrial Origin and Eukaryogenesis | 233 |
| 9.5 Conclusions | 241 |
| References | 242 |
| 10 The Diversity of Mitochondrion-Related Organelles Amongst Eukaryotic Microbes | 247 |
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| Summary | 247 |
| 10.1 Introduction | 247 |
| 10.2 Diversity of Anaerobic Protists with Mitochondrion- Related Organelles | 255 |
| 10.3 The Origins of Mitochondria, Mitosomes and Hydrogenosomes | 273 |
| 10.4 Concluding Remarks | 276 |
| References | 276 |
| 11 Mitosomes of Parasitic Protozoa: Biology and Evolutionary Significance | 284 |
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| Summary | 284 |
| 11.1 Introduction | 284 |
| 11.2 Discovery of Mitosomes: a Brief History | 285 |
| 11.3 Mitosome Biology | 288 |
| 11.4 Protein Import | 294 |
| 11.5 Evolutionary Considerations | 298 |
| 11.6 Conclusions | 301 |
| References | 302 |
| Index | 308 |